Transcript 126938

Transcript

ID CARD

MetamORF ID

126938

ENSMUST00000139489

Name

Bcas2-204

Strand

Biotype

retained_intron

Start-end positions

103171749-103178827

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:68183

Aliases

6430539P16Rik,
AI132645, Bcas2, C76366,
C80030, ENSMUSG00000005687, MGI:1915433,
NCBI:68183, OFF:Bcas2

Chr 3

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
133110	57	ATG ...	MRY ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
130385	237	GTG ...	VVV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
536787	51	ATG ...	MNL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
53927	84	TTG ...	LEH ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
127375	33	CTG ...	LLD ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
52229	60	CTG ...	LSY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
135920	123	GTG ...	VSL ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
54528	54	CTG ...	LEL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1171865	108	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
131958	117	CTG ...	LVS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
127552	45	TTG ...	LKD ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
139248	114	ATG ...	MAR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
17075	93	CTG ...	LLI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF
1174676	159	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
135676	75	CTG ...	LEN ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
749984	63	ATG ...	MNF ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
127975	105	ATG ...	MCK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
54581	48	CTG ...	LMS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1171197	174	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1172519	252	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
54107	51	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
131926	33	TTG ...	LNM ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
51983	105	CTG ...	LVE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
1171100	234	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1171580	186	GTG ...	VRE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
133713	30	ATG ...	MRH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
506526	114	GTG ...	VSK ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
751287	69	GTG ...	VPR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
16968	69	TTG ...	LNW ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1173089	174	ATG ...	MRL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
53679	102	GTG ...	VEE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
129036	39	CTG ...	LAA ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
367	90	TTG ...	LIF ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF
1173965	156	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
540803	30	ATG ...	MTL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
1172465	168	TTG ...	LSG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
128707	42	TTG ...	LTK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5

Export data