Transcript 292225

Transcript

ID CARD

MetamORF ID

292225

ENSMUST00000139054

Name

Aff4-205

Strand

Biotype

retained_intron

Start-end positions

53368630-53375938

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:93736

Aliases

AF5Q31,
Aff4, Alf4, ENSMUSG00000049470,
Laf4l, MCEF, MGI:2136171,
NCBI:93736, OFF:Aff4

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
639736	87	ATG ...	MYG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, v6-5
303195	135	ATG ...	MGM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
653392	231	TTG ...	LMS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E, v6-5
307062	114	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
647393	147	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
1121617	84	CTG ...	LGF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
647291	72	ATG ...	MDR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
294844	135	GTG ...	VAP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
307437	51	TTG ...	LSR ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, v6-5
309484	129	ATG ...	MIT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, R1E
1036118	39	CTG ...	LST ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
311625	120	GTG ...	VAR ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
643645	93	CTG ...	LPM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
303752	96	CTG ...	LQY ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
297555	39	ATG ...	MED ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, v6-5
1601840	81	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1837920	39	GTG ...	VGN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
298654	78	ATG ...	MPT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
303686	102	GTG ...	VTP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
297491	159	GTG ...	VEP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E, v6-5
642149	60	CTG ...	LWN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
1337545	96	CTG ...	LKP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
308909	111	TTG ...	LQF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1339847	30	CTG ...	LEN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
294722	171	GTG ...	VDT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
302396	108	ATG ...	MTV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
292224	183	CTG ...	LPC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

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