Transcript 15950 | MetamORF

Transcript

ID CARD

MetamORF ID

15950

ENSMUST00000138962

Name

Eif6-206

Strand

Biotype

retained_intron

Start-end positions

155822837-155826436

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:16418

Aliases

1110004P11,
AA408895, CAB, eIF-6,
Eif6, ENSMUSG00000027613, imc-415,
Itgb4bp, MGI:1196288, NCBI:16418,
OFF:Eif6, p27(BBP), p27BBP

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110422	72	GTG ...	VCF ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
45675	102	GTG ...	VHA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
15949	36	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
1052669	201	GTG ...	VQF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
49434	201	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
45769	132	GTG ...	VLV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
14875	39	CTG ...	LVA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
498070	96	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
495884	66	GTG ...	VLS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
44336	165	GTG ...	VEV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
733899	87	GTG ...	VHP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
499118	57	GTG ...	VVW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
111224	171	ATG ...	MGS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
44454	36	ATG ...	MWP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
95413	75	TTG ...	LVC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
44620	66	TTG ...	LFC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
45287	105	GTG ...	VVH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
44548	33	CTG ...	LPN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
100733	108	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
44826	42	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
112939	63	CTG ...	LWS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
45496	90	CTG ...	LVH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
15706	36	GTG ...	VAI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
47406	183	CTG ...	LAD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
46288	57	ATG ...	MSP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain
46983	63	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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