Transcript 293386

Transcript

ID CARD

MetamORF ID

293386

ENSMUST00000138782

Name

Lrrc59-202

Strand

Biotype

retained_intron

Start-end positions

94629814-94635252

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:98238

Aliases

AA959742,
C78668, ENSMUSG00000020869, Lrrc59,
MGI:2138133, NCBI:98238, OFF:Lrrc59

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1576093	228	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
935253	129	AAG ...	KAT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
445620	87	TTG ...	LAA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
935316	273	AAG ...	KGG ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
1286167	60	AGG ...	RPV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1287709	48	AGG ...	RAG ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
449358	36	ATG ...	MRS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	E14, Liver, NSC, Spleen_B_cell
936273	285	AAG ...	KAG ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
449930	69	CTG ...	LSW ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, Spleen_B_cell
454120	48	GTG ...	VIA ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
934581	117	TTG ...	LDL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
8961	57	GTG ...	VAG ...	Ribo-seq	GTG	strong	12	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1696737	66	ATG ...	MKS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
306001	84	CTG ...	LWP ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
293385	48	CTG ...	LHF ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, v6-5
1530571	42	CTG ...	LAP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
449610	195	GTG ...	VRR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil, Spleen_B_cell
931357	57	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
1338199	69	ATG ...	MFF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF
933085	63	ATT ...	IWI ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
451253	201	CTG ...	LGV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Neutrophil, Spleen_B_cell

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