Transcript 603974

Transcript

ID CARD

MetamORF ID

603974

ENSMUST00000138748

Name

Prdx2-206

Strand

Biotype

retained_intron

Start-end positions

84969694-84971125

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:21672

Aliases

AL022839,
Band-8, ENSMUSG00000005161, MGI:109486,
NCBI:21672, NkefB, OFF:Prdx2,
Prdx2, PRP, PrxII,
Tdpx1, TDX1, Torin,
TPx, TPx-B, TR,
TSA

Chr 8

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
917501	156	AAG ...	KYV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
611196	93	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
920240	240	AAG ...	KSA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
918397	246	ATC ...	IGK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
606529	198	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
607507	39	ATG ...	MSA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
80689	45	GTG ...	VSG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver
919724	105	ACG ...	TEI ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1445851	33	GTG ...	VDS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
919848	66	ATC ...	ISF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
431352	63	GTG ...	VWV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Liver
80709	57	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC
604851	84	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
427439	117	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
918632	138	ACG ...	TRK ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
429564	111	TTG ...	LER ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
611740	96	ATG ...	MVA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
606669	150	GTG ...	VVL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver
603973	78	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
919053	222	ACG ...	TAT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
5073	60	TTG ...	LFA ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver
604497	129	CTG ...	LDF ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver
1446137	39	GTG ...	VSV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver

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