Transcript 17689 | MetamORF

Transcript

ID CARD

MetamORF ID

17689

ENSMUST00000138407

Name

Copa-207

Strand

Biotype

retained_intron

Start-end positions

172082643-172093560

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:12847

Aliases

AU040324,
Copa, ENSMUSG00000026553, MGI:1334462,
NCBI:12847, OFF:Copa, xenin

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
722679	69	CTG ...	LDP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Liver
40573	42	ATG ...	MGS ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, Liver, Testis
49247	39	GTG ...	VPP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
30301	36	GTG ...	VWN ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, Testis
1235520	69	ATT ...	ILS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
32360	171	GTG ...	VLT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
1037413	33	TTG ...	LTN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
37556	51	CTG ...	LKD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
24265	54	GTG ...	VEA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, Testis
32114	114	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
23878	66	CTG ...	LSA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
1200045	129	ATA ...	ISS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1276002	45	AAG ...	KPW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
420312	33	ATT ...	IRD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
991931	30	ATG ...	MGL ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Liver
35007	45	TTG ...	LGV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, Testis
30566	66	CTG ...	LFV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1408173	66	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1304160	105	ATG ...	MIR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
17688	36	CTG ...	LGG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
39271	111	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
23062	99	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
67910	60	TTG ...	LQC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
964671	87	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
46991	126	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
955122	69	ACG ...	TKS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14

Export data