Transcript 332552

Transcript

ID CARD

MetamORF ID

332552

ENSMUST00000138401

Name

Dek-204

Strand

Biotype

processed_transcript

Start-end positions

47084775-47098438

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:110052

Aliases

1810019E15Rik,
D13H6S231E, Dek, ENSMUSG00000021377,
MGI:1926209, NCBI:110052, OFF:Dek

Chr 13

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1609635	78	TTG ...	LTE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
783652	84	ATG ...	MSL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, v6-5
462998	72	GTG ...	VMK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil
782609	138	CTG ...	LSD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil
340392	99	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
341236	168	CTG ...	LKF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
342323	153	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
336813	30	CTG ...	LKT ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
338800	66	ATG ...	MLR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF
341971	54	TTG ...	LTE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, v6-5
463656	69	ATG ...	MKM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil
783934	30	ATG ...	MKR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF
337038	36	CTG ...	LNL ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
784852	300	GTG ...	VKS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF, NSC, v6-5
782945	63	ATG ...	MRR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil
782572	135	CTG ...	LEQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, v6-5
341141	102	GTG ...	VLM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
943756	114	TTG ...	LEE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
341614	96	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
337724	72	GTG ...	VLM ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF
341457	141	GTG ...	VMK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
341973	204	CTG ...	LEQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
332551	30	CTG ...	LML ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, v6-5
339250	33	CTG ...	LRG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
340959	132	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
783959	99	CTG ...	LKF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, v6-5
341478	138	ATG ...	MKM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1041762	180	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil

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