Transcript 332538

Transcript

ID CARD

MetamORF ID

332538

ENSMUST00000138255

Name

Scamp1-202

Strand

Biotype

protein_coding

Start-end positions

94225023-94265146

CDS Start-stop positions

-94233159

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:107767

Aliases

4930505M11Rik,
AI415563, AW122395, ENSMUSG00000021687,
MGI:1349480, NCBI:107767, OFF:Scamp1,
Scamp1

Chr 13

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
340729	54	TTG ...	LMN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, Liver
341059	51	ATG ...	MNT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, Liver
334028	39	TTG ...	LMN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Brain, Liver
335942	96	ATG ...	MPW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver
336233	69	GTG ...	VTR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, Liver
334125	81	CTG ...	LNC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	Brain, Liver
337317	36	ATG ...	MNT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, Liver
332537	54	ATG ...	MCH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, Liver
342414	69	ATG ...	MCH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, Liver
340031	57	GTG ...	VPP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, Liver

Export data