Transcript 312764

Transcript

ID CARD

MetamORF ID

312764

ENSMUST00000138154

Name

Spag9-210

Strand

Biotype

processed_transcript

Start-end positions

94071663-94094229

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:70834

Aliases

3110018C07Rik,
4733401I23Rik, 4831406C20Rik, AW552012,
ENSMUSG00000020859, JIP-4, Jip4,
JLP, JSAP2, JSAP2a,
Mapk8ip4, MGI:1918084, NCBI:70834,
OFF:Spag9, Spag9, syd1

Chr 11

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1486750	75	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1486831	54	CTG ...	LVW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1486549	150	CTG ...	LNV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1598579	90	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1485467	66	ATG ...	MAE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1485809	90	GTG ...	VLQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1486068	78	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1486440	66	GTG ...	VKQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1601458	99	ATG ...	MAG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
1484448	102	GTG ...	VCC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1598950	87	TTG ...	LLE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
455858	174	GTG ...	VKA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Liver, NSC, Spleen_B_cell
1484479	42	CTG ...	LYQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
1338109	57	GTG ...	VPV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC
1601046	84	TTG ...	LER ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
319109	120	CTG ...	LPQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, NSC
1527646	51	CTG ...	LKL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
774280	114	GTG ...	VAR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
310087	42	TTG ...	LQF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
1485684	108	CTG ...	LTC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1599752	72	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1484720	54	CTG ...	LME ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
312763	141	GTG ...	VQA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, NSC, Spleen_B_cell
1484298	81	TTG ...	LFV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
291580	42	CTG ...	LKM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1597603	36	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1484577	57	TTG ...	LLV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1485226	48	CTG ...	LDL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	NSC
1485230	30	TTG ...	LML ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
936433	156	AAG ...	KED ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
306481	51	GTG ...	VQK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
296315	36	ATG ...	MQG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1527693	105	GTG ...	VVC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1484914	45	CTG ...	LED ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
775084	117	CTG ...	LVA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1485150	87	CTG ...	LQG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1486157	117	CTG ...	LKY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1485364	90	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1486933	117	GTG ...	VDE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1484604	165	TTG ...	LHI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1486542	141	GTG ...	VKN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1598697	75	GTG ...	VYF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1485883	42	CTG ...	LKA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC

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