Transcript 176440

Transcript

ID CARD

MetamORF ID

176440

ENSMUST00000138101

Name

Mdh2-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

135778662-135790398

CDS Start-stop positions

135778736-135785934

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:17448

Aliases

ENSMUSG00000019179,
MDH, Mdh-2, Mdh2,
MGI:97050, Mor-1, Mor1,
NCBI:17448, OFF:Mdh2

Chr 5

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
176439	123	CTG ...	LEK ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, E14, MEF
1236246	57	AGG ...	RAW ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1234530	117	AAG ...	KNL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
831628	51	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1558515	120	GTG ...	VYN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
1237927	36	ATA ...	ISL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
870930	39	CTG ...	LEP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
182566	69	TTG ...	LTF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
561782	78	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain
871753	42	ATG ...	MLE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	Brain, Glioma, Liver, MEF, MESC
62392	63	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
564774	81	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain
63823	261	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1237666	63	ATC ...	IQL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
181537	93	TTG ...	LPC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain
1239824	72	AGG ...	RLT ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
872510	63	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
1019183	150	TTG ...	LDR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
569979	102	CTG ...	LFS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, MEF
1735754	51	CTG ...	LKA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1559740	168	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
1237213	99	AAG ...	KIT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
568209	111	CTG ...	LGI ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, E14, MEF
1237370	102	ATC ...	IFG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Downstream NMD sORF	E14

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