Transcript 21774 | MetamORF

Transcript

ID CARD

MetamORF ID

21774

ENSMUST00000137815

Name

Rars-202

Strand

Biotype

processed_transcript

Start-end positions

35826495-35834461

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:104458

Aliases

2610011N19Rik,
2610037E21Rik, AL033339, AW985894,
ENSMUSG00000018848, MGI:1914297, NCBI:104458,
OFF:Rars, Rars, Rars1

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
773853	69	CTG ...	LWL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1695708	33	TTG ...	LTK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
21773	144	CTG ...	LTA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
771999	126	TTG ...	LCY ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, R1E
315410	168	CTG ...	LTA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
774292	225	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
317957	195	CTG ...	LQQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
1695854	39	TTG ...	LPF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
447151	105	TTG ...	LEA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, MEF, Neutrophil, R1E, Spleen_B_cell
930889	132	ATC ...	IDR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
935212	36	ATA ...	ILT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1696066	69	CTG ...	LPN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
445878	45	TTG ...	LET ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, R1E, Spleen_B_cell
318561	81	TTG ...	LKY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
315162	147	CTG ...	LKN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
771770	54	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
770067	150	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
772504	87	TTG ...	LEQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, R1E
771997	144	CTG ...	LMD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
1292258	120	AAG ...	KEQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
932770	243	ATT ...	INI ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
769540	141	ATG ...	MDC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
775555	147	GTG ...	VLM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1290128	153	ATT ...	IKA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
314297	129	TTG ...	LEA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
450090	123	CTG ...	LKN ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell
316997	198	TTG ...	LLQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
1838344	51	TTG ...	LAV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1287857	159	AGG ...	REI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14

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