Transcript 3832 | MetamORF

Transcript

ID CARD

MetamORF ID

3832

ENSMUST00000137808

Name

Uqcrc2-204

Strand

Biotype

retained_intron

Start-end positions

120644918-120650930

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:67003

Aliases

1500004O06Rik,
ENSMUSG00000030884, MGI:1914253, NCBI:67003,
OFF:Uqcrc2, Uqcrc2

Chr 7

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4141	105	CTG ...	LLF ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver, MEF, Skin_tumor, v6-5
4628	63	TTG ...	LPT ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, NSC, Skin_tumor, v6-5
4558	51	ATG ...	MPW ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, NSC, Skin_tumor, v6-5
4383	81	TTG ...	LRT ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, NSC, Skin_tumor, v6-5
3831	69	ATG ...	MML ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, NSC, Skin_tumor, v6-5
216038	69	TTG ...	LYC ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC
1257001	42	AAG ...	KIT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
4457	102	TTG ...	LFI ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver, MEF, NSC, Skin_tumor, v6-5
218527	81	TTG ...	LAN ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
219142	108	TTG ...	LHD ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, v6-5
4425	66	ATG ...	MLP ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, NSC, Skin_tumor, v6-5

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