Transcript 55822 | MetamORF

Transcript

ID CARD

MetamORF ID

55822

ENSMUST00000137589

Name

Pnrc1-202

Strand

Biotype

processed_transcript

Start-end positions

33246012-33290163

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:108767

Aliases

5730463C12Rik,
B4-2, ENSMUSG00000040128, MGI:1917838,
NCBI:108767, OFF:Pnrc1, Pnrc1,
Prol2, PRR2

Chr 4

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
546789	33	ATG ...	MVY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
159913	30	TTG ...	LKT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, NSC, Spleen_B_cell
548054	57	TTG ...	LAG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
151847	45	CTG ...	LMA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, NSC, Spleen_B_cell
824113	216	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
512536	72	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
55821	78	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
57962	51	ATG ...	MVL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell
513253	90	GTG ...	VTH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
897056	81	AAG ...	KHS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
56850	75	TTG ...	LLR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Neutrophil
157075	78	CTG ...	LLP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
57047	72	CTG ...	LRR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Neutrophil
146654	168	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell
551811	60	TTG ...	LPF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF
148199	195	TTG ...	LKK ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell
158651	102	ATG ...	MKV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, Spleen_B_cell
152913	36	GTG ...	VHL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, NSC, Spleen_B_cell
509333	102	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
147435	114	CTG ...	LQK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, Spleen_B_cell
544790	39	TTG ...	LCM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
159391	96	GTG ...	VTF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
545067	42	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell

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