Transcript 895474

Transcript

ID CARD

MetamORF ID

895474

ENSMUST00000137540

Name

Gclm-202

Strand

Biotype

processed_transcript

Start-end positions

122245712-122256971

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:14630

Aliases

AI649393,
ENSMUSG00000028124, Gclm, Gcmc,
Glclr, MGI:104995, NCBI:14630,
OFF:Gclm

Chr 3

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
865106	291	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
1015046	234	CTG ...	LHL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, R1E
1057977	213	CTG ...	LLN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
1223758	195	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
894784	33	ATG ...	MNG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
817760	135	CTG ...	LPW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver, MEF, Neutrophil
1057629	54	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1015177	252	CTG ...	LAR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, R1E
132123	42	ATG ...	MEF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
895473	228	CTG ...	LQT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
865400	216	CTG ...	LPT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
866595	231	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil
864745	249	CTG ...	LGH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Neutrophil

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