Transcript 56065 | MetamORF

Transcript

ID CARD

MetamORF ID

56065

ENSMUST00000137532

Name

Gm11837-202

Strand

Biotype

antisense_RNA

Start-end positions

14929908-14952893

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:100038514

Aliases

ENSMUSG00000086587,
Gm11837, MGI:3702175, NCBI:100038514,
OFF:Gm11837

Chr 4

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56064	51	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF	Testis
58027	66	TTG ...	LIG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF	E14, Testis
60160	105	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Overlapping sORF	Testis
58474	51	ATG ...	MNI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Overlapping sORF	Testis
60400	156	GTG ...	VSQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Overlapping sORF	Testis
57193	102	ATG ...	MEP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Overlapping sORF	Testis
60140	276	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Overlapping sORF	Testis
59649	57	CTG ...	LPD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF	Testis
59562	102	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Overlapping sORF	Testis
58070	81	ATG ...	MET ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Overlapping sORF	E14, Testis

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