Transcript 22380 | MetamORF

Transcript

ID CARD

MetamORF ID

22380

ENSMUST00000137304

Name

Mif4gd-206

Strand

Biotype

processed_transcript

Start-end positions

115607918-115612927

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:69674

Aliases

1110014L05Rik,
2310075G12Rik, ENSMUSG00000020743, MGI:1916924,
Mif4gd, NCBI:69674, OFF:Mif4gd

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
300929	117	GTG ...	VGS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
22379	297	CTG ...	LVN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, R1E, Testis
451760	126	GTG ...	VRP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
19975	102	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
305844	36	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
306476	48	ATG ...	MII ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
22650	264	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
18400	90	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
19564	93	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
20975	219	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
91920	213	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
91748	126	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
21818	207	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
91886	87	CTG ...	LLE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
21265	90	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
23306	246	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
21502	135	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
298659	84	ATG ...	MRG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
21584	39	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
296471	87	ATG ...	MMR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
90757	84	CTG ...	LEM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
20422	186	CTG ...	LEK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
21846	228	GTG ...	VDC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
91285	216	GTG ...	VLQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E

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