Transcript 17283 | MetamORF

Transcript

ID CARD

MetamORF ID

17283

ENSMUST00000137230

Name

Wdr45b-205

Strand

Biotype

processed_transcript

Start-end positions

121328232-121341188

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:66840

Aliases

0610008N23Rik,
AA408735, D16Bwg0193e, ENSMUSG00000025173,
MGI:1914090, NCBI:66840, OFF:Wdr45b,
Wdr45b, Wdr45l, WIPI-3

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1338002	69	GTG ...	VHI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1341292	51	CTG ...	LQH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, NSC
1340514	81	GTG ...	VCP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, NSC
313512	297	GTG ...	VSS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver
447510	36	GTG ...	VSG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
21301	54	TTG ...	LHV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
21928	102	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
774185	30	GTG ...	VCT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1394924	42	GTG ...	VCA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
932787	123	ATC ...	INF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
17282	111	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1342124	72	GTG ...	VIM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
307225	66	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
303464	75	CTG ...	LFS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Spleen_B_cell
658903	276	GTG ...	VHI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver
20801	84	GTG ...	VFT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
17694	108	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
311157	60	CTG ...	LCT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
309932	90	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14

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