Transcript 633 | MetamORF

Transcript

ID CARD

MetamORF ID

633

ENSMUST00000137109

Name

Stx12-202

Strand

Biotype

processed_transcript

Start-end positions

132857046-132863260

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:100226

Aliases

AI850350,
AU041521, ENSMUSG00000028879, MGI:1931027,
NCBI:100226, OFF:Stx12, Stx12,
Stx13

Chr 4

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
59432	96	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
632	57	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E, Skin_tumor
553556	36	CTG ...	LIS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
58569	105	GTG ...	VES ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Testis
152034	51	ATG ...	MWK ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC
55849	99	GTG ...	VQR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, NSC, R1E, Testis
1167	78	TTG ...	LDV ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
57754	108	ATG ...	MKS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, Testis
60243	144	ATG ...	MKS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1205	75	TTG ...	LCR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Skin_tumor
162813	96	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
546121	39	CTG ...	LTF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
921	60	CTG ...	LSK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, Skin_tumor, Testis
60109	186	TTG ...	LDV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, Neutrophil, R1E, Testis, v6-5

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