Transcript 56343 | MetamORF

Transcript

ID CARD

MetamORF ID

56343

ENSMUST00000136843

Name

Eif3i-203

Strand

Biotype

retained_intron

Start-end positions

129593329-129595768

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:54709

Aliases

36kDa,
D4Ertd632e, Eif3i, Eif3s2,
ENSMUSG00000028798, MGI:1860763, NCBI:54709,
OFF:Eif3i, Trip1

Chr 4

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56944	81	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Testis
547193	69	CTG ...	LCL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
57986	141	TTG ...	LVN ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Spleen_B_cell, Testis, v6-5
58604	240	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
59322	96	TTG ...	LSR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
59406	99	ATG ...	MIP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Testis
510064	60	TTG ...	LGA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell, v6-5
1230272	69	ATC ...	IRR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1229664	33	AGG ...	RPR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
546209	45	GTG ...	VRH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
550905	129	GTG ...	VPL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
511572	66	TTG ...	LTL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell, v6-5
57055	138	GTG ...	VNV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Spleen_B_cell, Testis, v6-5
546392	30	CTG ...	LHL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14
547647	63	CTG ...	LGP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
157576	84	CTG ...	LSG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Spleen_B_cell, v6-5
56342	144	GTG ...	VLV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Spleen_B_cell, Testis, v6-5
511596	141	GTG ...	VTQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell, v6-5
1231474	90	ATC ...	IAG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
977133	129	AAG ...	KEH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	MEF
512308	36	TTG ...	LSL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, Spleen_B_cell
1002	75	TTG ...	LNI ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, Spleen_B_cell, Testis, v6-5

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