Transcript 44065 | MetamORF

Transcript

ID CARD

MetamORF ID

44065

ENSMUST00000136816

Name

Fam102a-204

Strand

Biotype

retained_intron

Start-end positions

32535332-32569750

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:98952

Aliases

AI426465,
C230093N12Rik, Eeig1, ENSMUSG00000039157,
Fam102a, MGI:2138935, NCBI:98952,
OFF:Fam102a

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
44064	30	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
47666	84	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
93161	42	GTG ...	VYD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
113439	42	ATG ...	MTL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
100928	39	CTG ...	LDG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
113231	36	GTG ...	VWC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
108101	276	GTG ...	VEP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
44799	54	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
110152	159	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
112523	282	ATG ...	MSV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
100539	141	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
49293	180	TTG ...	LTH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
46560	42	GTG ...	VGP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
116714	99	TTG ...	LEE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
47238	102	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
47999	138	GTG ...	VES ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
100609	144	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
46588	288	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
46859	99	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
46188	60	CTG ...	LFV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
48615	96	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
98078	42	CTG ...	LLD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
44594	189	CTG ...	LSD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
109609	63	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
45122	33	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
44377	30	TTG ...	LHL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis

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