Transcript 105409

Transcript

ID CARD

MetamORF ID

105409

ENSMUST00000136688

Name

Tank-206

Strand

Biotype

processed_transcript

Start-end positions

61578611-61654090

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:21353

Aliases

C86182,
E430026L09Rik, ENSMUSG00000064289, I-TRAF,
MGI:107676, NCBI:21353, OFF:Tank,
Tank

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
45872	66	GTG ...	VSN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
971131	93	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
121121	216	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Neutrophil
970847	288	ATA ...	IRE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
109922	231	ATG ...	MRK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
107776	138	GTG ...	VVP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
116919	96	GTG ...	VCE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
122236	81	TTG ...	LGC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
971918	120	ATA ...	IEK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
122978	102	CTG ...	LRD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Spleen_B_cell
970277	153	AAG ...	KNN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
970630	300	ACG ...	TCL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
124127	216	CTG ...	LDS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
119905	117	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Spleen_B_cell
125674	273	GTG ...	VFY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
122254	237	CTG ...	LKS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, Neutrophil
119506	267	CTG ...	LSF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
120384	294	TTG ...	LPA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Spleen_B_cell
122974	177	TTG ...	LLE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Spleen_B_cell
122000	144	TTG ...	LTL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Spleen_B_cell
121924	72	TTG ...	LLA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, R1E, Spleen_B_cell

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