Transcript 291868

Transcript

ID CARD

MetamORF ID

291868

ENSMUST00000136662

Name

Rptor-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

119856259-119896153

CDS Start-stop positions

-119874262

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:74370

Aliases

4932417H02Rik,
ENSMUSG00000025583, MGI:1921620, mKIAA1303,
NCBI:74370, OFF:Rptor, Rap,
Raptor, Rptor

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
310273	66	GTG ...	VAG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
1289871	51	AAG ...	KAY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
291867	189	CTG ...	LTN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
309322	105	CTG ...	LDY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Brain, E14, R1E
308174	75	GTG ...	VNV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	Brain
304165	96	CTG ...	LSC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
303952	105	GTG ...	VTS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
305038	90	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
1284964	81	GTG ...	VPA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
296797	108	CTG ...	LDD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
295124	57	CTG ...	LGD ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
301699	102	GTG ...	VNA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
1289715	162	AAG ...	KNF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
309383	39	CTG ...	LDI ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, R1E
304184	42	CTG ...	LQK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
292972	57	GTG ...	VKG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
301386	57	GTG ...	VVK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
293464	48	CTG ...	LTA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
310185	108	GTG ...	VRF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
312339	63	GTG ...	VVK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
301646	177	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
300526	48	CTG ...	LNG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E

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