Transcript 58305 | MetamORF

Transcript

ID CARD

MetamORF ID

58305

ENSMUST00000136637

Name

Wasf2-205

Strand

Biotype

processed_transcript

Start-end positions

133189018-133190549

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:242687

Aliases

AW742646,
D4Ertd13e, ENSMUSG00000028868, MGI:1098641,
NCBI:242687, OFF:Wasf2, Wasf2,
WAVE2

Chr 4

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
554787	93	ATG ...	MEK ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, v6-5
1229414	54	ATT ...	ICR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
58304	102	GTG ...	VNP ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Testis, v6-5
753	60	TTG ...	LEG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, v6-5
60579	285	CTG ...	LTA ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
897	81	GTG ...	VGE ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
59783	180	CTG ...	LQD ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1230156	81	CTG ...	LQD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
863	48	TTG ...	LIF ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, v6-5

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