Transcript 446410

Transcript

ID CARD

MetamORF ID

446410

ENSMUST00000136605

Name

Inpp5k-204

Strand

Biotype

retained_intron

Start-end positions

75631029-75648863

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:19062

Aliases

C62,
ENSMUSG00000006127, Inpp5k, MGI:1194899,
NCBI:19062, OFF:Inpp5k, Pps,
SKIP

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
301476	48	GTG ...	VSL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell, v6-5
19174	117	TTG ...	LQE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
8686	30	GTG ...	VVW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell, v6-5
1079736	39	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
446301	33	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
301296	45	CTG ...	LKP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
446409	45	GTG ...	VLL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
308647	36	CTG ...	LNT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
18344	78	CTG ...	LEH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
295184	57	TTG ...	LES ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Neutrophil, Spleen_B_cell
20102	87	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
303393	42	GTG ...	VEC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
19430	111	CTG ...	LPP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell, v6-5
298392	69	ATG ...	MSA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
309130	102	GTG ...	VTW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil, Spleen_B_cell, v6-5
302203	45	CTG ...	LNN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Spleen_B_cell
301448	90	GTG ...	VAS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, Spleen_B_cell, v6-5
419174	42	CTG ...	LLR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
445926	42	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
418848	87	AGG ...	RNT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
295729	30	CTG ...	LNL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell, v6-5
641264	39	TTG ...	LRT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
307762	48	CTG ...	LTF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
932498	60	CTG ...	LML ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
20888	153	CTG ...	LKL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Neutrophil, Spleen_B_cell, v6-5
935653	39	ACG ...	TET ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
650403	30	TTG ...	LGC ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
309388	45	ATG ...	MTS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Spleen_B_cell
304576	42	TTG ...	LRE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

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