Transcript 370949

Transcript

ID CARD

MetamORF ID

370949

ENSMUST00000136532

Name

Cggbp1-202

Strand

Biotype

retained_intron

Start-end positions

64852702-64855986

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:106143

Aliases

AA960172,
AL023996, AW045841, Cggbp1,
ENSMUSG00000054604, MGI:2146370, NCBI:106143,
OFF:Cggbp1

Chr 16

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
793481	36	CTG ...	LLE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Liver, MEF
33368	48	GTG ...	VQA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
694601	66	CTG ...	LHR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
34196	33	CTG ...	LFP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
691889	42	CTG ...	LRK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
374591	96	GTG ...	VFY ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
793388	33	CTG ...	LEI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
371109	150	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
370948	69	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
34837	78	ATG ...	MTS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
1409591	105	TTG ...	LFF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver

Export data