Transcript 474530

Transcript

ID CARD

MetamORF ID

474530

ENSMUST00000136498

Name

Smarcal1-204

Strand

Biotype

retained_intron

Start-end positions

72583251-72626916

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:54380

Aliases

6030401P21Rik,
AI851716, ENSMUSG00000039354, MGI:1859183,
Mharp, NCBI:54380, OFF:Smarcal1,
Smarcal1

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
474529	42	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
707069	138	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
713084	132	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
795565	108	CTG ...	LDL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, v6-5
570186	180	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
1206846	33	ATG ...	MQL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
655804	159	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
389996	39	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
657133	33	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
659540	150	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
505076	93	CTG ...	LKA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
640394	189	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
1047419	45	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, v6-5
471640	114	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
651279	174	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
644042	123	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
364155	279	ATG ...	MPP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
487281	114	CTG ...	LEK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
1300254	81	AAG ...	KFL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1046852	30	ATG ...	MGE ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
458670	81	GTG ...	VPE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
701704	123	TTG ...	LKR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

Export data