Transcript 136426

Transcript

ID CARD

MetamORF ID

136426

ENSMUST00000136340

Name

Atp1a1-203

Strand

Biotype

retained_intron

Start-end positions

101585788-101589039

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:11928

Aliases

Atp1a1,
Atpa-1, BC010319, ENSMUSG00000033161,
MGI:88105, NCBI:11928, OFF:Atp1a1

Chr 3

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1220169	90	ATA ...	IVE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1013968	42	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF
1219630	108	AGG ...	REK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1219829	141	ATT ...	IEV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
136425	36	CTG ...	LFP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, MEF
1013961	120	GTG ...	VME ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
1218273	60	AAG ...	KDP ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1222495	174	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
136897	45	CTG ...	LQL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14

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