Transcript 764384

Transcript

ID CARD

MetamORF ID

764384

ENSMUST00000135662

Name

Wdr75-202

Strand

Biotype

retained_intron

Start-end positions

45814678-45823619

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:73674

Aliases

1300003A18Rik,
2410118I19Rik, C77608, ENSMUSG00000025995,
MGI:1920924, NCBI:73674, OFF:Wdr75,
Wdr75

Chr 1

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
799397	87	CTG ...	LKK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
764383	114	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
1099017	36	ATG ...	MVP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
1602942	30	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
45422	45	CTG ...	LFV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
34406	96	TTG ...	LGE ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, v6-5
1607301	33	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1142793	90	GTG ...	VPI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
685140	87	ATG ...	MSP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
769262	135	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
36688	33	CTG ...	LWN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, NSC, R1E
783938	105	ATG ...	MKS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
19358	156	GTG ...	VFV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
22861	90	TTG ...	LNV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, R1E, v6-5
783726	96	ATG ...	MIL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
1594726	84	CTG ...	LTM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
25123	54	TTG ...	LCS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
39807	195	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
801220	117	GTG ...	VMI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
37570	150	TTG ...	LGK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil
39311	108	CTG ...	LTC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, R1E
699220	42	ATG ...	MSQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
1637996	78	ATG ...	MAF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
32090	96	CTG ...	LAV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, R1E, v6-5
1140531	75	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
25998	177	TTG ...	LPT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
792405	48	CTG ...	LRK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, v6-5
783357	42	ATG ...	MLY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
670350	54	TTG ...	LSH ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
677549	30	ATG ...	MLK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, R1E, v6-5
28106	72	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
21454	30	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, v6-5
35517	201	TTG ...	LYI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
1596557	105	TTG ...	LLG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
61951	192	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1130148	42	ATG ...	MSC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1159330	42	CTG ...	LKM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
784233	48	TTG ...	LLW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
685454	132	TTG ...	LYL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
35828	72	CTG ...	LSK ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, v6-5
1141419	36	GTG ...	VLS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
25713	39	GTG ...	VAQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, R1E, v6-5
728459	156	GTG ...	VGS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E, v6-5

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