Transcript 3041 | MetamORF

Transcript

ID CARD

MetamORF ID

3041

ENSMUST00000135516

Name

Lpcat3-205

Strand

Biotype

retained_intron

Start-end positions

124663027-124704370

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:14792

Aliases

C3f,
ENSMUSG00000004270, Grcc3f, Lpcat,
Lpcat3, Lpeat, Lplat5,
Lpsat, Mboat5, MGI:1315211,
Moact5, NCBI:14792, Oact5,
OFF:Lpcat3, PTG

Chr 6

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1669482	63	CTG ...	LCI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1515539	36	CTG ...	LAS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
205306	129	CTG ...	LFY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
3311	75	CTG ...	LHV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, Skin_tumor, Spleen_B_cell, v6-5
204690	84	GTG ...	VWL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Spleen_B_cell, v6-5
1316358	45	GTG ...	VDN ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
197032	30	GTG ...	VAG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell, v6-5
200485	78	TTG ...	LSL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
527340	156	TTG ...	LGV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Neutrophil, Spleen_B_cell
200379	36	CTG ...	LTD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Neutrophil, Spleen_B_cell, v6-5
202261	177	TTG ...	LTS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Spleen_B_cell, v6-5
529284	111	CTG ...	LGV ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil, Spleen_B_cell
525317	84	CTG ...	LVP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5
202932	114	GTG ...	VRW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Spleen_B_cell, v6-5
525192	39	ATG ...	MGC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
526475	69	TTG ...	LPD ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	NSC, Spleen_B_cell, v6-5
575087	30	TTG ...	LCL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
206020	135	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
577010	42	GTG ...	VTT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	NSC
198906	132	TTG ...	LLE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Spleen_B_cell, v6-5
205455	156	CTG ...	LSG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Spleen_B_cell, v6-5
192202	117	GTG ...	VYR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
3040	57	CTG ...	LGQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Skin_tumor, Spleen_B_cell
194119	48	GTG ...	VRG ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
196880	147	CTG ...	LGF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Spleen_B_cell, v6-5
525291	42	TTG ...	LCC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
203247	165	GTG ...	VCI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Spleen_B_cell, v6-5
203311	51	CTG ...	LVR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
528801	150	GTG ...	VKP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Spleen_B_cell
204266	90	TTG ...	LVG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Neutrophil, Spleen_B_cell, v6-5
204550	78	TTG ...	LEI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
192063	60	TTG ...	LPY ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
193819	36	GTG ...	VPR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
528698	33	TTG ...	LTT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell, v6-5
196720	129	CTG ...	LEV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Spleen_B_cell, v6-5

Export data