Transcript 17382 | MetamORF

Transcript

ID CARD

MetamORF ID

17382

ENSMUST00000135515

Name

Mcrip1-202

Strand

Biotype

processed_transcript

Start-end positions

120542888-120549701

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:192173

Aliases

ENSMUSG00000061111,
Fam195b, Mcrip1, MGI:2384752,
NCBI:192173, OFF:Mcrip1

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91022	54	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
1289277	198	ATA ...	IAV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
22756	132	CTG ...	LSS ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
1288461	54	AGG ...	RVL ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
24200	81	ATG ...	MCA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
91448	30	ATG ...	MWR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, R1E, Testis
23586	144	CTG ...	LRS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
22047	48	CTG ...	LSD ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
19805	51	GTG ...	VEE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, R1E, Testis, v6-5
22453	108	GTG ...	VEE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Testis, v6-5
22940	186	GTG ...	VRF ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
20117	87	CTG ...	LRS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, R1E, Testis, v6-5
645283	69	CTG ...	LLQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil
19904	39	CTG ...	LKR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, R1E, Testis, v6-5
17395	75	CTG ...	LSS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, R1E, Testis, v6-5
24184	111	GTG ...	VRF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
17381	51	GTG ...	VLS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, Testis, v6-5
419381	90	ATT ...	IFT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
1294127	177	ATT ...	IYE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
18957	66	CTG ...	LQP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E, Testis
91026	39	GTG ...	VEK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, R1E, Testis, v6-5
21986	48	TTG ...	LSE ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, Testis, v6-5
419653	255	AAG ...	KRN ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
419148	132	AAG ...	KRN ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
933891	231	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
419438	210	ACG ...	TAR ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
1340402	39	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
934949	219	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
419803	213	ATT ...	IFT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
24197	96	GTG ...	VEK ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Testis, v6-5

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