Transcript 828366

Transcript

ID CARD

MetamORF ID

828366

ENSMUST00000135413

Name

Lap3-203

Strand

Biotype

retained_intron

Start-end positions

45498230-45504829

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:66988

Aliases

2410015L10Rik,
AA410100, ENSMUSG00000039682, Lap,
LAP-3, Lap3, Lapep,
MGI:1914238, NCBI:66988, OFF:Lap3,
Pep-7, Pep-S, Pep7,
Peps

Chr 5

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62240	117	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
64478	33	GTG ...	VAV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF
61558	120	GTG ...	VDP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF
518584	84	TTG ...	LEI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver
832721	36	GTG ...	VFV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver
872258	117	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
65180	51	CTG ...	LKQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF
522878	54	CTG ...	LDR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
517914	39	CTG ...	LVF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver
567280	69	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
172754	45	GTG ...	VEV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
177575	57	ATG ...	MRK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
63283	105	CTG ...	LME ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
872078	72	TTG ...	LHM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
170663	63	GTG ...	VEM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
871382	69	ATG ...	MQP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
985262	45	TTG ...	LWG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
62677	135	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF
182072	33	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
870702	66	ATG ...	MVF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
520640	30	GTG ...	VGK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
183276	66	GTG ...	VIS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
563633	42	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
63966	141	CTG ...	LEL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF
521918	99	ATG ...	MQA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF
184630	72	CTG ...	LGE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, MEF
65154	126	GTG ...	VEV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF
1736155	123	CTG ...	LKR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
561353	60	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
62417	78	GTG ...	VLG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF
517372	51	CTG ...	LWR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver

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