Transcript 315109

Transcript

ID CARD

MetamORF ID

315109

ENSMUST00000135405

Name

Nipsnap1-202

Strand

Biotype

processed_transcript

Start-end positions

4874005-4884404

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:18082

Aliases

ENSMUSG00000034285,
MGI:1278344, NCBI:18082, Nipsnap1,
OFF:Nipsnap1

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
451620	90	TTG ...	LCI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
646348	81	CTG ...	LVP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
659379	237	CTG ...	LLS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, v6-5
317813	174	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1294568	228	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
315108	234	CTG ...	LSK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, R1E, v6-5
304213	51	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
300635	99	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
449558	48	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
293585	126	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
305075	57	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
19769	42	GTG ...	VKP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
659413	267	GTG ...	VDP ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, v6-5
450669	81	GTG ...	VDP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
292159	105	GTG ...	VHH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
312630	147	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3

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