Transcript 466631

Transcript

ID CARD

MetamORF ID

466631

ENSMUST00000135221

Name

Ipo4-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

55625740-55635957

CDS Start-stop positions

55628655-55635598

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:75751

Aliases

8430408O15Rik,
AA409693, ENSMUSG00000002319, Imp4a,
Ipo4, MGI:1923001, NCBI:75751,
OFF:Ipo4, RanBP4

Chr 14

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
999997	96	CTG ...	LDD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
1614068	57	TTG ...	LWT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
28834	99	CTG ...	LGE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, R1E, v6-5
29052	60	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
29097	114	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E, v6-5
1404324	75	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
1350818	135	CTG ...	LYS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
29119	231	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1851970	123	GTG ...	VMP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
786431	36	CTG ...	LPW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, NSC
29977	138	CTG ...	LFA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E
29067	96	CTG ...	LAK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E, v6-5
28370	117	CTG ...	LLL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E
1140517	66	GTG ...	VAF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, v6-5
1614844	39	TTG ...	LHG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1764999	42	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
29548	111	GTG ...	VRK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, v6-5
28376	132	CTG ...	LLY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, R1E
785615	45	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
347493	99	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
29912	96	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, v6-5
29534	117	CTG ...	LPY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, Liver, R1E, v6-5
29003	75	GTG ...	VEN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E
29218	105	CTG ...	LTF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E, v6-5
1765166	39	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
29155	66	CTG ...	LHK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
348385	42	TTG ...	LWM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
28463	129	CTG ...	LYP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, R1E
1851404	30	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1614778	39	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
29603	78	CTG ...	LAE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, R1E, v6-5
29727	51	CTG ...	LPN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
348050	36	ATG ...	MWL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
28588	111	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E, v6-5
28758	120	CTG ...	LGV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, R1E, v6-5
344470	72	CTG ...	LSH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, R1E
28373	159	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1613294	72	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1613851	78	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
785501	30	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
350209	30	ATG ...	MLW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
29240	171	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
29029	120	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, Liver, R1E, v6-5
29676	87	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
28945	252	GTG ...	VAE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
29232	93	CTG ...	LFD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E, Spleen_B_cell, v6-5
29211	108	GTG ...	VCK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
787028	36	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
343456	75	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, R1E
29236	120	CTG ...	LLQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, R1E
29025	114	GTG ...	VLA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, v6-5
1404090	72	TTG ...	LTG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver

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