Transcript 14907 | MetamORF

Transcript

ID CARD

MetamORF ID

14907

ENSMUST00000135079

Name

Pdia3-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

121414108-121433700

CDS Start-stop positions

-121431731

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:14827

Aliases

58kDa,
ENSMUSG00000027248, Erp, ERp57,
ERp60, ERp61, Grp58,
MGI:95834, NCBI:14827, OFF:Pdia3,
PDI, PDI-Q2, Pdia3,
PI-PLC, PLC[a], Plca

Chr 2

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48824	57	ATG ...	MWT ...	Ribo-seq	ATG		16	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
964841	75	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
968881	81	ACG ...	TDE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	BMDC
15736	99	TTG ...	LKK ...	Ribo-seq	TTG		10	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
44926	81	CTG ...	LRK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	NMD sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
44592	90	TTG ...	LEL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	B_cell, Brain, C2C12, MEF
15341	132	CTG ...	LPT ...	Ribo-seq	CTG		15	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
964453	81	AGG ...	RTY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	BMDC
1640426	30	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
14906	42	ATG ...	MGL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	NMD sORF	BMDC, MEF, Neutrophil, Skin_tumor
15811	147	GTG ...	VDC ...	Ribo-seq	GTG		14	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, v6-5
965690	84	AAG ...	KFE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
14854	30	GTG ...	VKE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
49080	60	ATG ...	MMW ...	Ribo-seq	ATG		13	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
965546	33	AAG ...	KIK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
412808	42	ATT ...	IES ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	C2C12
15495	63	GTG ...	VKK ...	Ribo-seq	GTG		10	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell
15959	51	GTG ...	VLM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	NMD sORF	B_cell, MEF, Neutrophil, NSC, Skin_tumor
15842	51	ATG ...	MQV ...	Ribo-seq	ATG		9	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, Skin_tumor, v6-5
497623	30	TTG ...	LHT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
967200	45	ATG ...	MPQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	BMDC
48970	48	ATG ...	MKR ...	Ribo-seq	ATG		12	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
965353	138	ATT ...	IAL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	BMDC
46489	93	GTG ...	VLE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF
968112	111	AAG ...	KQD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
15428	96	GTG ...	VAT ...	Ribo-seq	GTG		13	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
15883	33	CTG ...	LVK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
45203	84	CTG ...	LTD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	B_cell, Brain, MEF
412086	39	AAG ...	KNA ...	Ribo-seq	AAG		2	sORFs_org_Mouse	NMD sORF	BMDC, C2C12
15357	66	ATG ...	MVK ...	Ribo-seq	ATG		13	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
15611	75	TTG ...	LRD ...	Ribo-seq	TTG		9	sORFs_org_Mouse	NMD sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, v6-5
966790	42	ATA ...	ITT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	BMDC
15042	105	ATG ...	MGS ...	Ribo-seq	ATG		13	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, v6-5
412535	96	AAG ...	KKQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	C2C12
15337	51	GTG ...	VDY ...	Ribo-seq	GTG		13	sORFs_org_Mouse	NMD sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
968331	33	ATT ...	IYS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	BMDC
812031	63	TTG ...	LTF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	B_cell, MEF, Neutrophil
47792	39	ATG ...	MLK ...	Ribo-seq	ATG		11	sORFs_org_Mouse	NMD sORF	3T3, B_cell, BMDC, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
15095	45	ATG ...	MMG ...	Ribo-seq	ATG		6	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, NSC, Skin_tumor
966032	87	AAG ...	KAR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
14980	90	TTG ...	LIQ ...	Ribo-seq	TTG		15	sORFs_org_Mouse	NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
969790	111	ATA ...	ISM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	BMDC
108084	66	GTG ...	VAY ...	Ribo-seq	GTG		10	sORFs_org_Mouse	NMD sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
412436	132	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	C2C12
1053487	231	ATG ...	MGI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, NSC
968584	30	AGG ...	RTS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	BMDC
967824	54	GTG ...	VIK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	BMDC, NSC
862851	69	TTG ...	LCL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil

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