Transcript 21108 | MetamORF

Transcript

ID CARD

MetamORF ID

21108

ENSMUST00000134185

Name

Taf15-204

Strand

Biotype

processed_transcript

Start-end positions

83473086-83489213

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:70439

Aliases

2610111C21Rik,
68kDa, ENSMUSG00000020680, MGI:1917689,
NCBI:70439, OFF:Taf15, Taf15,
Taf2n, TAFII68

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
445763	162	ATG ...	MVS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF, v6-5
452899	126	ATG ...	MIS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
310746	90	ATG ...	MGK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, v6-5
646703	225	ATG ...	MFF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
304201	96	CTG ...	LAM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, v6-5
1285221	36	AAG ...	KDG ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
447411	78	ATG ...	MIP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
452524	111	ATG ...	MVV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, v6-5
1122215	114	CTG ...	LNF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1288400	45	ATT ...	IHK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
446119	195	GTG ...	VEE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
1600077	126	TTG ...	LSV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
21107	111	GTG ...	VSR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis, v6-5
452543	102	ATG ...	MRI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, v6-5
1294358	153	AGG ...	REN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
310717	78	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
450890	144	ATG ...	MTS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
1529139	66	ATG ...	MDK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
454167	78	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
449760	177	ATG ...	MAS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
447519	75	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
451777	105	ATG ...	MMS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
454384	102	ATG ...	MSS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, v6-5
1291111	114	AAG ...	KAH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14

Export data