Transcript 490782

Transcript

ID CARD

MetamORF ID

490782

ENSMUST00000134049

Name

Ndufv1-206

Strand

Biotype

retained_intron

Start-end positions

4008365-4009140

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:17995

Aliases

CI-51kD,
ENSMUSG00000037916, MGI:107851, NCBI:17995,
Ndufv1, OFF:Ndufv1

Chr 19

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
858675	39	GTG ...	VVS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
1545043	48	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
721792	48	CTG ...	LHC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
720885	144	CTG ...	LCP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
722019	195	TTG ...	LKE ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
718572	183	TTG ...	LDA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
720277	105	TTG ...	LLA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
722295	102	CTG ...	LAL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
722619	96	TTG ...	LAE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
719652	69	TTG ...	LPS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
724853	159	ATG ...	MWR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
13957	30	CTG ...	LWR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
489095	36	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
722352	120	GTG ...	VGA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
490781	69	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
718669	48	ATG ...	MST ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
723449	120	ATG ...	MPH ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
723380	51	CTG ...	LVC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
721551	54	CTG ...	LAM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
721879	168	CTG ...	LWP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain

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