Transcript 421849

Transcript

ID CARD

MetamORF ID

421849

ENSMUST00000133944

Name

Dscr3-204

Strand

Biotype

retained_intron

Start-end positions

94510166-94526441

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:13185

Aliases

AW538125,
Dcra, Dscr3, ENSMUSG00000022898,
MGI:1206040, NCBI:13185, OFF:Vps26c,
Vps26c

Chr 16

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
367776	66	CTG ...	LRW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
369297	36	GTG ...	VWV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
370449	30	GTG ...	VCS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
375335	75	CTG ...	LLV ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, Spleen_B_cell, v6-5
1148387	45	GTG ...	VPK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
696604	54	GTG ...	VWW ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1148682	42	GTG ...	VAR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
475612	75	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell
693663	57	CTG ...	LVW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
951133	204	CTG ...	LDI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
373521	51	CTG ...	LYE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell, v6-5
1045481	30	GTG ...	VFV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
370303	69	GTG ...	VKG ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell, v6-5
1147123	33	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
367635	129	CTG ...	LKP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, Spleen_B_cell, v6-5
372090	132	GTG ...	VLK ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, Spleen_B_cell, v6-5
475334	78	GTG ...	VLT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell
421848	195	AAG ...	KIK ...	Ribo-seq	AAG		3	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12, E14
475056	39	ATG ...	MRL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5

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