Transcript 8444 | MetamORF

Transcript

ID CARD

MetamORF ID

8444

ENSMUST00000133501

Name

Cltc-204

Strand

Biotype

processed_transcript

Start-end positions

86724198-86726452

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:67300

Aliases

3110065L21Rik,
CHC, Cltc, ENSMUSG00000047126,
MGI:2388633, NCBI:67300, OFF:Cltc,
R74732

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
309085	96	GTG ...	VLK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, MEF, Neutrophil
21172	33	CTG ...	LQR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, MEF, Neutrophil
24193	261	GTG ...	VAA ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
931451	297	ATA ...	IIP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
931790	51	AGG ...	RET ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
312061	93	CTG ...	LKN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Neutrophil
8443	114	TTG ...	LDQ ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Neutrophil, Skin_tumor
291899	45	CTG ...	LYF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell
934379	120	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
8466	99	CTG ...	LNK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Neutrophil, Skin_tumor
933388	240	GTG ...	VRN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
91465	75	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Neutrophil
312298	99	CTG ...	LVL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, Neutrophil
19138	66	ATG ...	MLS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, MEF, Neutrophil
994247	252	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
935434	111	ATT ...	IPE ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
934809	96	ATA ...	IPS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
299585	81	TTG ...	LPG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, MEF, Neutrophil
933065	42	AGG ...	RAE ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
934895	90	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
8994	36	TTG ...	LEK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, Skin_tumor
935624	258	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
452703	57	TTG ...	LCG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC

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