Transcript 516396

Transcript

ID CARD

MetamORF ID

516396

ENSMUST00000132976

Name

Lrwd1-203

Strand

Biotype

retained_intron

Start-end positions

136123067-136136001

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:71735

Aliases

1200011O22Rik,
AU042569, AW548074, ENSMUSG00000029703,
Lrwd1, MGI:1918985, NCBI:71735,
OFF:Lrwd1, Orca

Chr 5

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
516504	126	CTG ...	LLT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1559215	30	ATG ...	MQP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
64790	75	GTG ...	VAN ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
522076	33	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
517163	60	GTG ...	VSG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
65142	102	GTG ...	VTK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
517973	57	ATG ...	MWW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
168558	69	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
516424	144	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
169177	72	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
63013	114	TTG ...	LGQ ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
177418	90	GTG ...	VNF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
521255	39	TTG ...	LRD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
516655	36	TTG ...	LRS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
61387	99	GTG ...	VCE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Spleen_B_cell
519418	66	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
170975	111	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
65651	42	CTG ...	LTD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
516845	36	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
519986	57	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
516998	60	CTG ...	LPC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
62778	138	CTG ...	LKW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
61449	51	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
516395	63	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
518647	45	GTG ...	VGD ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell

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