Transcript 508888

Transcript

ID CARD

MetamORF ID

508888

ENSMUST00000132693

Name

Trp53inp1-204

Strand

Biotype

processed_transcript

Start-end positions

11156444-11166400

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:60599

Aliases

2700057G22Rik,
ENSMUSG00000028211, MGI:1926609, NCBI:60599,
OFF:Trp53inp1, p53DINP1, SIP,
SIP18, SIP27, Stinp,
Teap, Trp53inp1

Chr 4

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56175	285	TTG ...	LEC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
57546	276	TTG ...	LTD ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
1508060	66	ATG ...	MHC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	NSC
823106	33	GTG ...	VIL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1080830	39	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
151819	42	GTG ...	VRK ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, NSC
1176186	90	CTG ...	LVH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	NSC
1176586	108	CTG ...	LSN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
1080782	39	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
150721	30	ATG ...	MMN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
57466	33	ATG ...	MMT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
1178380	69	CTG ...	LFY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
1082215	69	TTG ...	LVK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	NSC
413954	30	ATG ...	MTL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, Spleen_B_cell
1178507	108	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	NSC
1081824	69	ATG ...	MFY ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
56497	162	GTG ...	VET ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, NSC, Spleen_B_cell
58040	102	GTG ...	VHN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
1080872	66	GTG ...	VKS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
1177697	78	ATG ...	MKT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC

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