Transcript 339897

Transcript

ID CARD

MetamORF ID

339897

ENSMUST00000132304

Name

Paip1-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

119429119-119457319

CDS Start-stop positions

-119447781

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:218693

Aliases

ENSMUSG00000025451,
MGI:2384993, NCBI:218693, OFF:Paip1,
PAIP-1, Paip1

Chr 13

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
333053	45	GTG ...	VRI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
339896	84	CTG ...	LCN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, v6-5
1041371	54	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Neutrophil
1610254	60	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
334555	42	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
337836	63	ATG ...	MDG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
1040915	66	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil
1041569	159	CTG ...	LNH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC
1763324	36	ATG ...	MLC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
1346650	60	CTG ...	LTI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	E14, MEF
337447	57	ATG ...	MRM ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
332668	48	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	E14
27286	42	ATG ...	MLC ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
1134961	72	CTG ...	LSH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
335150	54	ATG ...	MDK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
1041646	150	CTG ...	LTE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, NSC
27353	90	TTG ...	LDD ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	NMD sORF	3T3, MEF, Neutrophil, v6-5
781824	39	ATG ...	MKL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	E14, Neutrophil, v6-5
1041809	108	TTG ...	LKL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, v6-5
1135959	93	GTG ...	VTR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
1040833	111	TTG ...	LTG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, v6-5
1041251	96	CTG ...	LNG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	E14, Neutrophil
332795	51	ATG ...	MVV ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1135966	75	TTG ...	LNC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
335520	45	ATG ...	MML ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
1347233	54	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14

Export data