Transcript 509156

Transcript

ID CARD

MetamORF ID

509156

ENSMUST00000132292

Name

Jak1-203

Strand

Biotype

processed_transcript

Start-end positions

101181912-101265223

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:16451

Aliases

AA960307,
BAP004, C130039L05Rik, ENSMUSG00000028530,
Jak1, MGI:96628, NCBI:16451,
OFF:Jak1

Chr 4

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
511186	75	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
413972	57	TTG ...	LEG ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil
509402	42	CTG ...	LWM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	NSC, Spleen_B_cell
826463	57	CTG ...	LTQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
512456	129	ATG ...	MTT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
1059208	72	GTG ...	VPL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
151740	36	CTG ...	LVR ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, NSC, Spleen_B_cell
512491	114	CTG ...	LYG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
827725	114	GTG ...	VCE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
511236	75	TTG ...	LPA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, Neutrophil, Spleen_B_cell
827219	72	TTG ...	LPA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil
1654978	36	CTG ...	LHG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
413903	105	CTG ...	LNG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
509155	60	CTG ...	LTQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
822535	30	GTG ...	VHQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
512324	108	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Spleen_B_cell
509182	84	ATG ...	MRA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1015921	39	CTG ...	LEY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1658934	123	CTG ...	LAC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1059531	30	CTG ...	LFA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
511415	183	TTG ...	LTF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell

Export data