Transcript 8058 | MetamORF

Transcript

ID CARD

MetamORF ID

8058

ENSMUST00000132022

Name

Actr2-202

Strand

Biotype

processed_transcript

Start-end positions

20078686-20112867

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:66713

Aliases

4921510D23Rik,
AA409782, Actr2, Arp2,
D6Ertd746e, ENSMUSG00000020152, MGI:1913963,
NCBI:66713, OFF:Actr2

Chr 11

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8165	42	TTG ...	LVM ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
91381	138	GTG ...	VDS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, Neutrophil, Testis
293914	33	TTG ...	LKL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, NSC
295808	72	TTG ...	LCR ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, NSC, R1E, v6-5
934971	168	ATC ...	IVR ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
8140	39	GTG ...	VMR ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
8978	138	CTG ...	LWD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, Neutrophil, Skin_tumor
8134	210	CTG ...	LRS ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
1037861	36	CTG ...	LGG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
8924	198	TTG ...	LEV ...	Ribo-seq	TTG		14	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis
931396	96	ATG ...	MLK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
8785	192	GTG ...	VNY ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis
930553	42	ATA ...	ILL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
8983	30	ATG ...	MAS ...	Ribo-seq	ATG	strong	13	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
932781	30	ATC ...	IQP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
91011	153	CTG ...	LTG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil, Testis
930326	111	ATT ...	IWT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1286767	144	AAG ...	KHL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
419202	114	CTG ...	LEM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14
8057	165	GTG ...	VRN ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis
933235	30	ATA ...	ILS ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1290680	111	ATT ...	ICP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1037175	39	TTG ...	LLG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
299867	42	ATG ...	MWV ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, NSC, v6-5
310202	42	ATG ...	MPS ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, v6-5
9144	36	ATG ...	MRQ ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
932829	108	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
8290	123	GTG ...	VGL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Skin_tumor
1037291	51	GTG ...	VYV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
935389	69	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1292514	66	AGG ...	RLD ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
303203	75	CTG ...	LQD ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, Neutrophil, NSC
1292543	57	AAG ...	KEA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1530218	63	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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