Transcript 575589

Transcript

ID CARD

MetamORF ID

575589

ENSMUST00000131805

Name

Usp5-204

Strand

Biotype

retained_intron

Start-end positions

124815420-124818637

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:22225

Aliases

AA407472,
ENSMUSG00000038429, ISOT, ISOT-1,
MGI:1347343, NCBI:22225, OFF:Usp5,
Ucht, Usp5

Chr 6

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
583717	69	GTG ...	VCA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
1248372	165	ATC ...	ISQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
579529	90	GTG ...	VIY ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
575588	129	CTG ...	LDA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
580815	36	GTG ...	VQQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
579871	90	GTG ...	VYY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
581964	156	CTG ...	LDE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
575737	132	TTG ...	LVE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1244178	69	ATT ...	ISH ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
576596	39	CTG ...	LGY ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
583107	63	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
196300	48	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
580408	84	TTG ...	LQT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1244752	153	AGG ...	RGT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1247262	42	CTG ...	LCT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1245465	141	ATC ...	IIQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1244611	123	ATC ...	IRH ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
579050	129	GTG ...	VEM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
583264	54	GTG ...	VGL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1248136	30	ATC ...	IYF ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1247069	54	AAG ...	KPP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1245647	138	ATT ...	IDD ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
583779	156	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
577561	57	ATG ...	MPA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
578388	78	CTG ...	LPE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14

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