Transcript 10145 | MetamORF

Transcript

ID CARD

MetamORF ID

10145

ENSMUST00000131648

Name

Pfkp-202

Strand

Biotype

retained_intron

Start-end positions

6579768-6588966

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:56421

Aliases

1200015H23Rik,
9330125N24Rik, ATP-PFK, ENSMUSG00000021196,
MGI:1891833, NCBI:56421, OFF:Pfkp,
PFK-C, PFK-P, Pfkp

Chr 13

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
463033	42	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
942580	60	AAG ...	KRD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
941998	30	ATC ...	ISC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
782409	39	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
463565	33	CTG ...	LES ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
942457	84	ATG ...	MKN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
462566	54	GTG ...	VSW ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell, v6-5
332370	78	TTG ...	LAK ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
10417	51	TTG ...	LEP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Skin_tumor, Spleen_B_cell
941622	129	AGG ...	RIP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
332367	87	CTG ...	LTS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell, v6-5
941713	114	ATT ...	IQA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
463252	66	ATG ...	MIP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell, v6-5
942308	84	AAG ...	KIL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
461641	105	CTG ...	LKL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
462645	36	GTG ...	VAE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5
336614	69	TTG ...	LCP ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell, v6-5
941864	126	ATG ...	MTC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
463849	45	CTG ...	LWL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
942139	90	ATG ...	MEA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
941901	33	ATG ...	MSH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
462466	75	TTG ...	LLA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell, v6-5
10295	57	GTG ...	VHL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Skin_tumor, Spleen_B_cell, v6-5
941779	72	AAG ...	KYE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
338928	54	TTG ...	LQE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Spleen_B_cell
942072	135	AGG ...	RRA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
783720	48	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
463822	36	CTG ...	LPK ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell, v6-5
10144	51	TTG ...	LTE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Skin_tumor, Spleen_B_cell, v6-5
463515	48	CTG ...	LFQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5
462106	63	GTG ...	VFD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
337800	99	CTG ...	LRP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
942361	30	AGG ...	RQA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
462717	45	GTG ...	VAE ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
463073	72	CTG ...	LGI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Spleen_B_cell, v6-5

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