Transcript 293850

Transcript

ID CARD

MetamORF ID

293850

ENSMUST00000131227

Name

C1d-203

Strand

Biotype

processed_transcript

Start-end positions

17257579-17262910

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:57316

Aliases

1110036E10Rik,
AI875855, C1d, ENSMUSG00000000581,
MGI:1927354, NCBI:57316, OFF:C1d,
SUN-CoR

Chr 11

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
932429	171	ATC ...	IIV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
931047	108	ATT ...	IHE ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
91509	66	GTG ...	VDD ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	B_cell
19704	54	CTG ...	LKT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
17501	87	CTG ...	LES ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
1286416	168	ATC ...	IVR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
91079	75	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
933269	156	ATT ...	ISR ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
91225	54	ATG ...	MAS ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver
932422	51	AAG ...	KTM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC

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