Transcript 112105

Transcript

ID CARD

MetamORF ID

112105

ENSMUST00000131119

Name

Lypla1-204

Strand

Biotype

protein_coding

Start-end positions

4808237-4841093

CDS Start-stop positions

4830275-

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:18777

Aliases

APT-1,
ENSMUSG00000025903, Gm39587, LPL-I,
Lypla1, MGI:1344588, NCBI:18777,
OFF:Lypla1, Pla1a

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
210155	84	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, B_cell, Brain
385350	48	ATG ...	MAF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	3T3, B_cell, Brain
817160	36	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell
327874	57	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
311258	54	GTG ...	VSL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Brain
811432	30	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	B_cell
20142	78	ATG ...	MDG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
732554	63	TTG ...	LDF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, B_cell
378789	48	CTG ...	LHS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
20201	60	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
748378	72	ATG ...	MDG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
750459	114	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
112104	72	TTG ...	LIS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain

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