Transcript 62041 | MetamORF

Transcript

ID CARD

MetamORF ID

62041

ENSMUST00000130842

Name

Tmem165-202

Strand

Biotype

protein_coding

Start-end positions

76199117-76204655

CDS Start-stop positions

76199495-

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:21982

Aliases

AV026557,
ENSMUSG00000029234, MGI:894407, NCBI:21982,
OFF:Tmem165, pFT27, Tmem165,
Tpardl, Tparl

Chr 5

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
65556	177	CTG ...	LGF ...	Ribo-seq	CTG		9	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
64586	234	TTG ...	LTP ...	Ribo-seq	TTG		10	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
62040	156	GTG ...	VAA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Neutrophil, NSC, Spleen_B_cell, Testis
1089068	33	ATG ...	MRL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	v6-5
901927	72	AAG ...	KKM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	BMDC
182452	99	TTG ...	LAM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
1511968	60	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	NSC
169892	93	ATG ...	MPQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	3T3
1237261	99	ATT ...	IYP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF	E14
904268	66	ATA ...	IHT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF	E14
178344	66	ATG ...	MQL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Brain, NSC
182227	48	CTG ...	LHS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
167566	57	ATG ...	MFQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	3T3

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