Transcript 61267 | MetamORF

Transcript

ID CARD

MetamORF ID

61267

ENSMUST00000130682

Name

Ikbip-204

Strand

Biotype

processed_transcript

Start-end positions

91095975-91102095

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:67454

Aliases

1200009F10Rik,
1700023M03Rik, D18354, ENSMUSG00000019975,
Ikbip, Ikip, MGI:1914704,
NCBI:67454, OFF:Ikbip

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1885524	159	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1752311	39	GTG ...	VHG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1801724	198	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1735472	264	CTG ...	LIG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
288426	87	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
289767	48	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
288569	78	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1889473	189	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
290744	123	CTG ...	LTM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
64963	111	CTG ...	LVV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
1120372	153	CTG ...	LIG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1746044	234	CTG ...	LTM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
61266	45	TTG ...	LGE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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