Transcript 34003 | MetamORF

Transcript

ID CARD

MetamORF ID

34003

ENSMUST00000130080

Name

C330027C09Rik-206

Strand

Biotype

retained_intron

Start-end positions

49008411-49019651

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:224171

Aliases

AA408511,
AU018569, C330027C09Rik, Cip2a,
ENSMUSG00000033031, Kiaa1524, MGI:2146335,
NCBI:224171, OFF:Cip2a

Chr 16

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1185491	99	AAG ...	KNT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
34002	51	TTG ...	LVP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1187729	33	AAG ...	KVV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1185489	33	ATA ...	ILT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
694523	108	TTG ...	LKL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1187802	114	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1187703	54	ATG ...	MKL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1185421	45	CTG ...	LKR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
696512	111	TTG ...	LLK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
695608	36	TTG ...	LNE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
1186633	87	ACG ...	TSD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
474541	66	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
1186515	33	AAG ...	KSR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1185605	66	AAG ...	KRA ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
695730	87	TTG ...	LNK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1185988	84	ATA ...	IRI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
34122	66	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1188047	129	TTG ...	LEE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1185729	66	CTG ...	LIA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1186627	57	TTG ...	LRV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1185672	78	ATA ...	ISD ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1621935	30	CTG ...	LTY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1186165	90	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1187452	96	TTG ...	LIE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1186871	36	TTG ...	LRE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1186042	150	AGG ...	RKM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14

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